Cost-efficient Yeast genome Flongle library
Yutaro Hori
Abstract
A cost-efficient protocol for constructing a Flongle library.
Steps
Assemble the following components to end repair and add A to the genomic sample:
A | B |
---|---|
Ultra II buffer | 1.75 |
End repair buffer | 1.75 |
Ultra II enzyme | 1 |
End repair enzyme | 1 |
DNA | x (500 ng) |
MQ | 44.5 - x |
Incubate at 20°C
for 0h 5m 0s
, then 65°C
for 0h 5m 0s
.
Add 50µL
of Ampure beads (or equivalent beads) and mix well.
Wash with 75 % EtOH twice and elute with 11µL
of 10millimolar (mM)
Tris-HCl (pH 8.0).
Keep the tube on the magnetic rack and do not disturb the beads while washing with 75% EtOH.
Use 1µL
of the solution to check the concentration with Qubit. The concentration needs to be at least 30ng/uL
.
Assemble the following components for ligation:
A | B |
---|---|
DNA | 10 uL |
TLB | 4 uL |
Quick ligase | 1.5 uL |
AMX | 0.8 uL |
Incubate at Room temperature
for 0h 30m 0s
.
Add 2.3µL
of 5Molarity (M)
NaCl and incubate at Room temperature
for 0h 30m 0s
and then cfg at max speed for 0h 20m 0s
.
Remove sup and add PEG wash buffer, cfg at max speed for 0h 1m 0s
.
Remove sup and add 11µL
of 10mM Tris-HCl (pH 8.0) and incubate at 4°C
for.
Check the concentration with Qubit.
Assemble the following priming solution:
A | B |
---|---|
FLB | 2.5 uL |
FB | 97.5 uL |
and the library mix solution:
A | B |
---|---|
DNA | x uL (100 ng) |
SB II | 10 uL |
LB II | 4 uL |
MQ | 6 - x uL |
. Load them and start sequencing.