A fast, easy, cost-free method to remove excess dye or drug from exosome solution

Ioannis Isaioglou, Gloria Lopez-Madrigal, Jasmeen Merzaban

Published: 2024-04-19 DOI: 10.17504/protocols.io.14egn3k4pl5d/v1

Disclaimer

The current protocol is now published in a peer-reviewed article at PLOS ONE doi.org/10.1371/journal.pone.0301761

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Abstract

This protocol details a cost-free method to remove excess dye or drug from exosome solution.

Attachments

Steps

Protocol Steps

1.

Collect 0.5 x 106 cells (preferably parental cells used for exosome isolation)* and wash them with

phosphate buffered saline (PBS) or alternative buffer.

Note
*Since exosomes derived from their parental cells usually share the same ligands, the likelihood of their ligands interacting is lower.

2.

Pellet down the cells (typically 350x g).

3.

Add the mixture containing the stained exosomes** with the excess dye/drug to the cell pellet.

Note
** The proposed cleaning protocol has been tested to a range from 100,000 to 1,000,000 exosomes.

4.

Resuspend by gently pipetting the cells and leave the mixture shaking at 350rpm,37°C

5.

Spin down the mixture so the cells form a pellet using the same parameters as in step 2.

6.

Transfer the supernatant into a new clean tube. This supernatant should now contain the stained or loaded exosomes without any excess dye in the buffer solution used.

Note
To optimize the protocol, whenever new types of exosomes/dye are being used, it is advisable to continue with the following steps:

7.

Repeat steps 2 through 5:

  • Pellet down the cells (typically 350x g).
  • Add the mixture containing the stained exosomes** with the excess dye/drug to the cell pellet.
  • Resuspend by gently pipetting the cells and leave the mixture shaking at 350rpm,37°C
  • Spin down the mixture so the cells form a pellet using the same parameters as in step 2.
8.

Collect the supernatant which contains the stained exosomes without the excess dye.

9.

Resuspend the pellet in PBS buffer (or alternative) and check whether the cells (test cells) were stained. This confirmation step can be verified using fluorescent microscopy or flow cytometry for fluorescent drugs or dyes.

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