Whole Gut Transit Time, Fecal Water Content, and Fecal Output
Bryan Yoo, Jessica Griffiths, Sarkis Mazmanian
Abstract
This protocol was used in "Peripheral Neuronal Activation Shapes the Microbiome and Alters Gut Physiology"
Steps
Experiment Preparation
6% (w/v) carmine red (Sigma-Aldrich, St. Louis, MO) with 0.5% methylcellulose (Sigma-Aldrich)
was dissolved and autoclaved prior to use.
Experiment
Mice were administered C21 (3 mg/kg) intraperitoneally, and subsequently orally
gavaged with 150 µL of carmine red solution.
Following gavage, mice were single-housed with no bedding for the duration of the experiment, and
animals were not fasted beforehand.
Over the 5 hours following gavage, the time of expulsion was recorded for each fecal
pellet, and each pellet was collected in pre-weighed, 1.5 mL microcentrifuge
tube.
Each pellet collected was checked for the presence of carmine red, and the time of
initial carmine red pellet expulsion was recorded as GI transit time.
Sample Processing
The mass of collected fecal pellets was determined, and pellets were left to dry in
an 80 ºC oven for 2 days before weighing the desiccated pellets and calculating
the pellets’ initial water content.
Data Analysis
Fecal output rate for each mouse was calculated as the total number of pellets
expelled during the 5 hour time course post-C21 administration divided by the
time the last fecal pellet was expelled.