ASAP protocol: Crystallization of Enterovirus A71 3C protease (PDB code 8CNY)

Peter Marples, Lizbé Koekemoer, Daren Fearon, ryan Lithgo

Published: 2023-12-19 DOI: 10.17504/protocols.io.yxmvm3e89l3p/v1

Abstract

The crystallization protocol and buffer conditions used to obtain Enterovirus A71 3C protease crystals. The crystal structure was depostited to RCSB PDB with code 8CNY.

Steps

Equipment needed

1.

Formulatrix Rock Imager (or incubator of choice)

SPT mosquito

P100 multi-channel pipette

SwissCI 3 lens plate

Crystallization experiment

2.

Protein and buffer requirements:

43.2µL``1millimolar (mM)``Sample

2.88mL

3.

Crystallisation screen composition:

0.1 M Tris-HCl (pH 8.50)

0.2 M Magnesium chloride hexahydrate

30% w/v PEG 4000

Stock solutions used:

1 M Tris-HCl adjusted to pH 8.5 with HCl

1 M MgCl2.6H20

50% w/v PEG 4000

Note
The crystallisation screen can be stored in a duran bottle or aliquoted into 96 deep well block for easy dispensing into SwissCI 3 lens plates. For long term storage keep the Crystallisation screen in the fridge at 4°C.

4.

Dispense 30µL into SwissCI 3 lens plate reservoir wells using a 100 µl multi-channel pipette.

Dispense 150nL``1millimolar (mM)``Sample to each lens using the SPT mosquito.

Dispense 150nL to each lens using the SPT mosquito.

Drop ratio: 1:1

Final drop volume: 300 nl

5.

Incubate at 20°C for 24h 0m 0s in Formulatrix Rock Imager.

Imaging Schedule : The first images are taken after 12hrs and the imaging schedule follows a Fibonacci sequence of days for further collections.

6.

Crystal typically form after ~24hrs

Citation
Crystals typically reach their maximum size after ~24 h with precipitation often remaining. They typically form without seeding and are sturdy enough to be manipulated in solution readily.Morphology: typically thin rectangles with pointed ends.Size: ~50 μm in length and ~25 μm in width, depth of the crystals is ~5 μm, giving aglass shard appearanceAverage resolution: 1.5 ÅSpace group: C2221Unit cell: 64.90 Å, 65.73 Å, 76.27 Å 90.00°, 90.00°, 90.00°
An example of a drop containing EV A71 3C protease crystals.
An example of a drop containing EV A71 3C protease crystals.

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