Improved sampling and DNA extraction procedures for microbiome analysis in food-processing environments
Federica Pinto, Nicola Segata, Coral Barcenilla, José F. Cobo-Díaz, Francesca De Filippis, Vincenzo Valentino, Raul Cabrera Rubio, Dominic O’Neil, Lisa Mahler de Sanchez, Federica Armanini, Niccolò Carlino, Aitor Blanco-Míguez, Inés Calvete-Torre, Carlos Sabater, Susana Delgado, Patricia Ruas-Madiedo, Narciso M. Quijada, Monika Dzieciol, Sigurlaug Skírnisdóttir, Stephen Knobloch, Alba Puente, Mercedes López, Miguel Prieto, Viggó Thór Marteinsson, Martin Wagner, Abelardo Margolles, Paul D. Cotter, Danilo Ercolini, Avelino Alvarez-Ordóñez
DNA extraction
microbiome analysis
food-processing environments
whole-metagenome sequencing
metagenome assembled genomes























Supplementary information
Supplementary Information
Supplementary Fig. 1, Note and Methods
Reporting Summary
Supplementary Video 1
Microbiome mapping in the food industry: a detailed visual procedure on how to prepare the materials and take the samples at a food-processing facility. The steps that should be followed in the laboratory for sample pre-processing are shown.