S2: Step-by-step-guide using MeshLab in the work flow.

Paul Kalke, Conrad Helm

Published: 2022-11-02 DOI: 10.17504/protocols.io.j8nlkk59dl5r/v2

Abstract

How to do data refinements like repair, smooth and simplification in MeshLab and export as -ply-file.

Steps

1.

•Open MeshLab

•First step is Cleaning and Repairing your mesh-irrelevant if it is generated by Image J, Amira or any other software, the steps are the same

•Often used procedures/steps:

  • Remove Duplicate Faces

  • Remove Dublicate Vertices

  • Merge Close Vertices

  • Repair non Manifold edges by…

•Just try out, the results are written in the downright white window

--> Also see: more specific

https://www.youtube.com/watch?v=aoDLrXp1sfYhttps://www.youtube.com/watch?v=j9EKk3Bs1TQhttps://www.youtube.com/watch?v=gWBm5XGRJOk

--> more general

Mister P. MeshLab Tutorialshttps://www.youtube.com/playlist?list=PL8B1E816EAE236B4D

2.

•Now re-mesh your label by Remeshing: Isotropic Remeshing

•You can do that multiple times but 1 or 2 is enough to change the topology of your vertices in a more regular distribution

3.

•Result of re-meshing shown in Blender

4.

•A smoothing step is possible here but not obligatory

• Taubin smooth or Laplacian Smooth are suitable and can be used also multiple times

5.

•Result of 2 times Taubin Smooth shown in Blender

6.

•Now you reduce the size by decreasing the vertices of your label/surface by Simplification: Quadric Edge Collapse Decimation

7.

•Result of 2 times simplification shown in Blender

8.

•Save label as .ply-file

•Repeat all described steps for each label or batch of labels by opening a new file

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