cfSNV: a software tool for the sensitive detection of somatic mutations from cell-free DNA Shuo Li, Ran Hu, Colin Small, Ting-Yu Kang, Chun-Chi Liu, Xianghong Jasmine Zhou, Wenyuan Li Published: 2023-02-26 DOI: 10.1038/s41596-023-00807-w somatic mutations cfDNA cfSNV mutation detection whole-exome sequencing AI 解读 浏览 1273 PDFMetadata 暂无数据 推荐阅读 Nature Protocols Protocols IO Current Protocols Author Correction: Efficient and strand-specific profiling of replicating chromatin with enrichment and sequencing of protein-associated nascent DNA in mammalian cells Practical and concise synthesis of nucleoside analogs Preparation and quantitative analysis of multicenter luminescence materials for sensing function Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS GLORI for absolute quantification of transcriptome-wide m6A at single-base resolution Generating human bone marrow organoids for disease modeling and drug discovery Responsive and activable nanomedicines for remodeling the tumor microenvironment PepSeq: a fully in vitro platform for highly multiplexed serology using customizable DNA-barcoded peptide libraries Optimizing the Cell Painting assay for image-based profiling Ligand functionalization of titanium nanopattern enables the analysis of cell–ligand interactions by super-resolution microscopy 查看全部 Magnetic bead cleaning of PCR products with Cytiva Sera-Mag Select Change Release Protocol Kraus et al., 2022 FBXO7 /Park15 ASAPCRN Caltech-SCFA-methods fecal Caltech-SCFA-methods fecal Liquid Chromatography Mass Spectrometry ASAPCRN Modified Organic Extraction Protocol (Pedersen et al., 2016) Sedimentary DNA SedDNA Miltenyi Biotec: Adipose Tissue Dissociation -- University of Minnesota TMCs Dissociation Adipose Miltenyi University of Minnesota Data and script to reproduce the analysis in 'Changes in methodological study characteristics in psychology between 2010-2021' psychology jatsdecoder statistical methods text mining ABT263 (Navitoclax) Treatment in Mice ABT263 Navitoclax Mice Oral Gavage Meat speciation NGS protocol using DNeasy mericon food kit, Ion AmpliSeq Library Kit Plus, Ion Chef, and Ion GeneStudio S5 System meat speciation targeted NGS next generation sequencing Purification of MBP-NAP1 ASAPCRN 查看全部 Super-Resolution Stimulated Raman Scattering Microscopy with Graphical User Interface–Supported A-PoD deconvolution metabolic imaging stimulated Raman scattering super-resolution Genome Editing with CRISPR-Cas: An Overview Cas9 Cas12a CRISPR gene editing genome editing Population Genetic Inference With MIGRATE Bayesian inference coalescent divergence time DNA gene flow MCMC microsatellite population genetics Specific Localization and Quantification of the Oligo-Mouse-Microbiota (OMM12) by Fluorescence In Situ Hybridization (FISH) altered Schaedler flora intestine microbial ecology oligo-MM sDMDMm2 single-cell analysis spatial structure Rapid Tagging of Human Proteins with Fluorescent Reporters by Genome Engineering using Double-Stranded DNA Donors Cas9 CRISPR double-stranded DNA donors fluorescent protein genome engineering homology-directed repair tissue culture cells Harnessing the 3D-Beacons Network: A Comprehensive Guide to Accessing and Displaying Protein Structure Data 3D-Beacons FAIR data access federated data network macromolecular structures programmatic access structural bioinformatics Quantifying the Probing and Selection of Microenvironmental Pores by Motile Immune Cells leukocyte mechanosensing micro-channels microenvironment migration pores Optimizing PCR for Mouse Genotyping: Recommendations for Reliable, Rapid, Cost Effective, Robust and Adaptable to High-Throughput Genotyping Protocol for Any Type of Mutation 3Rs replacement reduction refinement automation genotyping molecular biology mouse model PCR reproducibility Bacterial Pathogenesis: Assessment of Intracellular Positioning of Pathogen-Containing Vacuoles During Infection bacterial pathogenesis host-pathogen interactions intracellular pathogen intracellular trafficking Salmonella enterica A Sensitive and Quantitative Assay to Enumerate and Measure Mycobacterium leprae Viability in Clinical and Experimental Specimens leprosy • leprosy lesion • molecular viability assay • mouse footpad • Mycobacterium leprae 查看全部