Tutorial: integrative computational analysis of bulk RNA-sequencing data to characterize tumor immunity using RIMA

Yang Liu, Lin Yang, Yi Zhang, Jin Wang, Jennifer Altreuter, Aashna Jhaveri, Cheryl J. Wong, Li Song, Jingxin Fu, Len Taing, Sudheshna Bodapati, Avinash Sahu, Collin Tokheim, Zexian Zeng, Gali Bai, Ming Tang, Xintao Qiu, Henry W. Long, Franziska Michor, X. Shirley Liu

Published: 2023-06-29 DOI: 10.1038/s41596-023-00841-8

RNA-seq

Tumor immunity

Computational analysis

RIMA

Immunotherapy

AI 解读

Supplementary information

Supplementary Software 1

Source code of the RIMA pipeline

Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data

ProBac-seq, a bacterial single-cell RNA sequencing methodology using droplet microfluidics and large oligonucleotide probe sets

Identification of cancer-related mutations in human pluripotent stem cells using RNA-seq analysis

Spiral volumetric optoacoustic tomography for imaging whole-body biodynamics in small animals

Genetic manipulation and immortalized culture of ex vivo primary human germinal center B cells

Tutorial: design and execution of CRISPR in vivo screens

Reproducible strategy for excisional skin-wound-healing studies in mice

CRISPR–Cas9-mediated chromosome engineering inArabidopsis thaliana

Human primordial germ cell-like cells specified from resetting precursors develop in human hindgut organoids

Tracking endocytosis and intracellular distribution of spherical nucleic acids with correlative single-cell imaging

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Supplementary information

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Tutorial: integrative computational analysis of bulk RNA-sequencing data to characterize tumor immunity using RIMA

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