S-3 SOIL STORAGE

Disclaimer

This work is supported by the US Army Medical Research and Development Command under Contract No.W81XWH-21-C-0001, W81XWH-22-C-0093 and HT9425-23-C-0059. The views, opinions and/or findings contained in this report are those of the author(s) and should not be construed as an official Department of the Army or Navy position, policy or decision unless so designated by other documentation.

Abstract

This protocol describes soil storage.

Steps

STORAGE PROCEDURE FOR UNTREATED SAMPLE

Note

NOTES : Collected soil samples need to be kept on a cold chain at all times to prevent RNA degradation. The following procedure will apply only where -80°C storage is feasible.If -80°C storage is not possible, temporarily store the soil samples in a -20°C freezer and follow soil sample processing SOP (REDI-NET SOP S-2 Soil Processing) as soon as possible for total nucleic acid extraction. Subsequently, use a portion of the total nucleic acid and reverse- transcribe RNA into cDNA for -20°C storage. To do this, follow the initial steps of the soil sample testing SOP (REDI-NET SOP S-4 Soil Testing) cDNA Synthesis until finishing step 40.

Cool 96-well microfuge tube racks On ice.

Each collected soil sample will be transferred to a 50 mL falcon tube with a unique sample ID. Put falcon tubes into cryo/freezer box.

Label the boxes with unique box ID.

Close the box tightly, secure with clear Saran wrap and immediately transfer to -80°C freezer.

Update the freezer inventory so that samples can be tracked properly.

STORAGE PROCEDURE FOR TOTAL NUCLEIC ACID

Note

NOTES : The following procedure is to properly store total nucleic acid extracted from soil samples (including negative controls) using the KingFisher nucleic acid purification system. The eluted total nucleic acid will be in either 96-well microplate (Flex model) or elution strip (Duo Prime model).Total nucleic acid samples need to be kept On ice all the time to minimize RNA degradation.

In the clean PCR workstation, carefully transfer the eluted total nucleic acid to a 96-well PCR microplate, make sure to keep samples in the exact same locations corresponding to the rack where the original ticks were stored.

Note

IMPORTANT : Mark the “A1” position of the 96-well microplate to prevent any mistakes on plate orientation.

Cover the 96-well PCR microplate with adhesive film to prevent spill over or contamination.

Label the film with a unique plate ID.

Immediately transfer the 96-well PCR microplate to -80°C freezer.

10.

Update the freezer inventory so that samples can be tracked properly.

Disclaimer

Abstract

Steps

STORAGE PROCEDURE FOR UNTREATED SAMPLE

STORAGE PROCEDURE FOR TOTAL NUCLEIC ACID

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