Engineering megabase-sized genomic deletions with MACHETE (Molecular Alteration of Chromosomes with Engineered Tandem Elements) Francisco M. Barriga, Scott W. Lowe Published: 2024-02-07 DOI: 10.1038/s41596-024-00953-9 CRISPR-Cas9 MACHETE genomic deletions selection cassette site-specific nucleases AI 解读 浏览 1809 PDFMetadataSupplementary information Reporting Summary 推荐阅读 Nature Protocols Protocols IO Current Protocols Quantification of organelle contact sites by split-GFP-based contact site sensors (SPLICS) in living cells Tutorial: guidelines for annotating single-cell transcriptomic maps using automated and manual methods An analytical workflow for dynamic characterization and quantification of metal-bearing nanomaterials in biological matrices In vivo fluorescent labeling and tracking of extracellular matrix Single-particle tracking photoactivated localization microscopy of membrane proteins in living plant tissues The cell-line-derived subcutaneous tumor model in preclinical cancer research Modular segmentation, spatial analysis and visualization of volume electron microscopy datasets Formulation of two lipid-based membrane–core nanoparticles for FOLFOX combination therapy Sample preparation strategies for efficient correlation of 3D SIM and soft X-ray tomography data at cryogenic temperatures High-throughput anaerobic screening for identifying compounds acting against gut bacteria in monocultures or communities 查看全部 Electrophysiological recording from Brain Slices Protocol ASAPCRN iSeq Bacterial WGS Protocol using a quarter of the reagents iSeq Salmonella Nextera Flex Illumina DNA Prep WGS Vet-LIRN bacterial WGS low-throughput WGS WGS training Intraperitoneal Injection in an Adult Mouse AF0085 IP mice In Situ Imaging of N-Glycans by MALDI Imaging Mass Spectrometry of Formalin-Fixed Paraffin-Embedded Tissue Protocol for "Neuromelanin accumulation drives endogenous synuclienopathy in non-human primates" Tyrosinase Alpha-synuclein Lewy bodies Marinesco bodies Prion-like spread L-Type Ca2+ Current Protocol Synthetic COI spike-ins for use in metabarcoding-based insect biodiversity surveys Spike-in COI metabarcoding synthetic DNA normalisation calibration Elution, SDS-PAGE, and RNA Purification RNA degradation Protein–RNA interaction RNA-binding sites UV cross-linking Yeast Exosome RNA processing Protocols from: Evolutionary analyses of visual opsin genes in frogs and toads: diversity, duplication, and positive selection Characterization of osmoregulated periplasmic glucans with high resolution LCMS 查看全部 Optimized Workflow for Whole Genome and Transcriptome Next-Generation Sequencing of Single Cells or Limited Nucleic Acid Samples genomics MDA transcriptomics viral nucleic acid next-generation sequencing single cell Antibody-Based CAR T Cells Produced by Lentiviral Transduction CAR T cells chimeric antigen receptor lentiviral transduction Mammalian Reoviruses: Propagation, Quantification, and Storage cesium chloride ultracentrifugation double-stranded RNA mouse cell culture non-enveloped virus plaque assay RNA virus Measurement of Trogocytosis: Quantitative Analyses Validated with Rigorous Controls antibody-drug conjugates complement immune complex clearance immune adherence trogocytosis Validation of a Novel, Flash-Freezing Method: Aluminum Platform DNA fresh tissue immunofluorescence liver pancreas RNA A Patient-to-Model-to-Patient (PMP) Cancer Drug Discovery Protocol for Identifying and Validating Therapeutic Agents Targeting Tumor Regulatory Architecture biomarkers cancer drug discovery regulatory networks systems pharmacology Using Nanocompore to Identify RNA Modifications from Direct RNA Nanopore Sequencing Data bioinformatics direct RNA nanopore sequencing Nanocompore nanopore sequencing RNA RNA modifications Improving Species Level-taxonomic Assignment from 16S rRNA Sequencing Technologies 16S rRNA gene amplicons DADA2 microbiota composition metagenomics species-classification Detection and Quantitation of DNA Damage on a Genome-wide Scale Using RADAR-seq base excision repair DNA damage DNA nick DNA repair next-generation sequencing SMRT sequencing Human Umbilical Cord Mesenchymal Stem Cell–Based in vitro Model for Neurotoxicity Testing cytotoxicity test mesenchymal stem cells neuron-like cells neuronal markers 查看全部