DOH Workshop Part 2: Promega Pronex protocol
Natalie Ring, Bryan Wee, Vesa Qarkaxhija
Abstract
This protocol is to purify extracted dsDNA, removing contaminants (e.g., buffers, proteins, salts, etc.) and low molecular weight DNA (e.g., dsDNA adapters, ssDNA oligonucleotides and nucleotides).
Before start
Ensure that the Pronex Wash Buffer is prepared according to instructions on them (i.e.adding appropriate amount of Ethanol).
Attachments
Steps
Promega Pronex protocol
Into your extracted DNA tube pipette 80µL
of Pronex beads and mix into the sample by slowly pipetting 10 times.
Leave at Room temperature
for 0h 10m 0s
.
Place the sample on a magnetic rack for0h 2m 0s
(or longer if necessary) until the solution becomes clear and the beads form a pellet.
While leaving tubes on the magnet, carefully remove and discard supernatant without disturbing the beads using a P1000.
While the tube is on the magnetic rack, add 200µL
of Pronex wash buffer without flushing directly onto the pellet. If 200µL
is not enough to submerge the pellet, use more wash buffer.
Allow to incubate for 0h 0m 30s
-0h 1m 0s
.
While leaving tubes on the magnet, carefully remove and discard wash buffer without disturbing the beads using a P1000.
Keeping the tube on the magnetic stand, carefully add 200µL
of Pronex Wash Buffer without flushing directly onto the pellet. If 200µL
is not enough to submerge the pellet, use more wash buffer.
Allow to incubate for 0h 0m 30s
-0h 1m 0s
.
While leaving tubes on the magnet, carefully remove and discard wash buffer without disturbing the beads using a P1000.
Remove the sample from the magnetic stand.
Leave for0h 5m 0s
at Room temperature
to elute the DNA.
Quantify 1µL
of DNA elute using the Qubit™ dsDNA HS Assay Kit or QuantiFluor® ONE dsDNA System.