Sample preconditioning before scanning electron microscopy (SEM)

An.Huang

Published: 2022-10-11 DOI: 10.17504/protocols.io.36wgqj465vk5/v1

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Abstract

Bacterial samples need to be preconditioned before visualized by scanning electron microscope (SEM). This protocol describes preconditioning methods of bacteria before SEM.

Steps

Bacterial samples preconditioning

1.

Obtain a small quantity of bacteria to be tested from a culture.

2.

Centrifuge the samples at5000rpm,4°C . Resuspend the pellet using 1X phosphate buffed saline (PBS). Repeat this step for three times. Keep the supernatant after the third centrifuge and preserve the samples at 4°C .

SEM sample preconditioning

3.

Wash silica wafers with ddH2O and acetone for three times.

4.

Add samples onto the silica wafer using a pipette tip.

5.

Incubate the silica wafers in fixation solution (2.5% glutaraldehyde in 1X PBS) at4°C overnight.

6.

Incubate the samples in ethanol solution with an increasing concentration (40%, 70%, 96%, 100%) for 1h 0m 0s each concentration.

7.

Dry the samples at room temperature for 1h 0m 0s.

8.

Use a precision etching coating system, sputtering the samples with Au-Pd alloy.

Note
If samples contain gold, sputter the samples with chromium.

9.

The samples are ready to be visualized using SEM

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