Modelling protocols for derivation of Fe(III) NICA constants and calculations of ambient Fe speciation and apparent Fe(III) solubility in seawater

Kechen Zhu, Jan E. Groenenberg, Eric P. Achterberg, Martha Gledhill

Published: 2022-07-11 DOI: 10.17504/protocols.io.brc4m2yw

Abstract

Calculations of iron (Fe) speciation using the NICA-Donnan model can be useful for development of an understanding of the physico-chemical parameters (e.g. temperature, pH) that can influence Fe speciation in seawater (Hiemstra and van Riemsdjik. 2006; Gledhill et al. 2015; Avendano et al. 2016). Here we archive a protocol that can be used to calculate Fe speciation in seawater and derive new NICA constants for Fe binding to marine DOM, in combination with appropriately designed titration experiments. Importantly, for derivation of NICA constants, a pH dimension of sufficient resolution and breadth must be included in the experimental design. The protocol combines the chemical software ORCHESTRA with parameter estimation program PEST and was first described by (Janot et al. 2017) to successfully derive NICA constants for Cd and Zn binding to standard Laurentian Fulvic acid.

Before start

  1. The Java program must be installed on your computer.

  2. Calculations via chemical speciation software ORCHESTRA can be performed on Windows, Linux and Apple OSX, but the combination of PEST-ORCHESTRA can only be performed using Windows. We have only applied the software in Windows and the manual we have written is thus relevant to Windows and may not be applicable to use on Apple OSX or Linux.

Attachments

Steps

The application of PEST-ORCHESTRA to the estimation of NICA-Donnan parameters in seawater

1.

Install chemical speciation software ORCHESTRA and parameter estimation program PEST

Software

ValueLabel
ORCHESTRANAME
Hans MeeussenDEVELOPER
http://orchestra.meeussen.nl/LINK
2020VERSION

Software

ValueLabel
PEST: Model-Independent Parameter Estimation and Uncertainty AnaNAME
John DohertyDEVELOPER
https://pesthomepage.org/LINK
version 17.1 ofVERSION
2.

Set up the calculation in ORCHESTRA

Note
Please check the manual in the attachment.

3.

Test the calculation in ORCHESTRA

4.

Set up the combination of PEST-ORCHESTRA

Note
Please check the Manual in the attachment.

5.

Derive NICA constants for Fe binding to marine dissolved organic matter

Note
Please check example files in the attachment.

6.

Check the results for optimization of Fe(III) NICA constants

Note
Please check the manual in the attachment.

Calculations of ambient Fe speciation and apparent Fe(III) solubility using the NICA-Donnan model in seawater

7.

Calculations of ambient Fe speciation via ORCHESTRA

Note
An example calculation with original source code is provided in the attachment.

8.

Calculations of apparent Fe(III) solubility via ORCHESTRA

Note
An example calculation within original source code is provided in the attachment.

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