Elution of nasal lining fluid collected via nasosorption
Samuel Montgomery
Abstract
This procedure outlines the materials and processes for eluting nasal lining fluid collected using a Mucosal Diagnostics FX-i nasosorption device. This protocol has been successfully used to elute nasal lining fluid for both DNA extraction for 16s rRNA sequencing & metagenomics, and for proteomics using the SomaScan assay.
Steps
Making elution buffer
Add 0.05% volume
of Tween20 to PBS in a sterile environment to reduce cross-contamination
Store at 4°C
until required
Elution of nasal lining fluid
Thaw nasosorption device in cryotube on ice
Add 300µL
of elution buffer to a labelled 2mL microcentrifuge tube and place on ice
Remove the synthetic absorptive matrix (SAM) from the nasosorption device using sterile forceps by tearing it from the handle and place in the microcentrifuge tube containing elution buffer
Vortex the microcentrifuge tube for 0h 0m 30s
Using a new pair of sterile forceps, remove the SAM from the elution buffer, and place into a spinX column on a new 2mL microcentrifuge tube
Add the elution buffer from the first tube onto the SAM in the spinX column
Centrifuge the SAM and spinX column at 16000x g,0h 0m 0s
for 0h 30m 0s
at 4°C
Discard the spinX column and SAM
Aliquot the eluate into labelled microtubes, and measure total protein concentration using the assay of your choice (Pierce BCA assay, Qubit protein assay etc)