Protocol preparation of bacterial cells

Thomas Quiroz Monnens, Alice Boulanger

Published: 2024-05-25 DOI: 10.17504/protocols.io.dm6gpzb45lzp/v1

Abstract

This protocol details the preparation of bacterial cells to set up LSBA.

Steps

For Xanthomonas campestris pv. campestris (Xcc)

1.

Note
Estimated preparation time of the bacterial suspension is around one hour excluding an overnight growth step.

We collect bacteria in exponential phase. (OD600nm between 1 and 2). For our experiments, 400mL of washed bacteria at an OD600nm of 0.1 (1 × 108 cfu/ml) are required for the lower receiver of each of the LSBAs.

2.

For 1 LSBAs, inoculate 100mL of liquid MOKA medium with appropriate antibiotics (here Rifampicin 50 µg/ml) using Xcc and grow at 28°C under agitation at 200 rpm.

3.

Centrifuge the overnight growth for 10 minutes at 6,000 rpm and wash twice with 1millimolar (mM) MgCl2.

Note
1 mM MgCl2 is the common physiological serum used for differentXanthomonas species including Xcc.

3.1.

Centrifuge the overnight growth for 6000rpm and wash twice with 1millimolar (mM)MgCl2(1/2).

3.2.

Centrifuge the overnight growth for 6000rpm and wash twice with 1millimolar (mM)MgCl2(2/2).

4.

Resuspend the final pellet in 5mL of 1millimolar (mM) MgCl2 and measure the OD600nm.

5.

Add 1mL of bacterial suspension at a concentration of 4 x 1010 cells/ml to a syringe with a 25G needle.

For Schewanella oneidensis (So)

6.

We collect bacteria in exponential phase. (OD600nmbetween 3 and 4). For our experiments, 400 ml of washed bacteria at an OD600nmof 0.1 (1 × 108cfu/ml) are required for the lower receiver of each of the LSBAs.

7.
8.

For 1 LSBAs, inoculate 100mLof liquid LB medium with appropriate antibiotics (here Rifampicin 50 µg/ml) using So and grow at 28°Cunder agitation at 200 rpm.

9.

Centrifuge the overnight growth for 10 minutes at 3,500 rpm and wash twice with LM medium.

9.1.

Centrifuge the overnight growth for 3500rpm and wash twice with LM medium. (1/2)

9.2.

Centrifuge the overnight growth for 3500rpm and wash twice with LM medium. (2/2)

10.

Resuspend the final pellet in 5mL LM medium and measure the OD600nm.

11.

Add 1mLof bacterial suspension at a concentration of 4 x 1010cells/ml to a syringe with a 25G needle.

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