Pluripotency markers staining

Hanqin Li, Dirk Hockemeyer, Frank Soldner

Published: 2022-09-06 DOI: 10.17504/protocols.io.b4yyqxxw

Abstract

This protocol describes the standard procedure for staining pluripotency markers, e.g. OCT4, SSEA4, alkaline phosphatase, and etc. on human pluripotent stem cells (hPSCs).

Protocol overview

A. Immunofluorescence staining

B. Alkaline phosphatase staining

General notes

Throughout this protocol, the term hPSC is used to collectively refer to both hiPSCs and hESCs. All described procedures have been tested and work equally well for hiPSCs and hESCs.

Steps

A. Immunofluorescence staining

1.

Wash cells once with PBS

1.1.

Phosphate buffer saline, PBS, pH 7.4

AB
NaCl137 mM
KCl2.7 mM
Na2HPO410 mM
KH2PO41.8 mM
CaCl2•2H2O1 mM
MgCl2•6H2O0.5 mM
2.

Fix cells with 4% PFA at 4Room temperature for 0h 15m 0s

Note
You should not fix cells if staining for cell surface proteins

2.1.

4% PFA, pH 7.4

AB
PBS500 ml
PFA20 g
NaOHAdjust pH to 7.4

Final volume: 500 ml

3.

Wash cells twice with PBS, incubate 0h 5m 0s in between washes at Room temperature

4.

Incubate in PBST for 0h 30m 0s at Room temperature to permeabilize cell membrane

4.1.

PBST, pH 7.4

AB
PBS1x
Triton-X1000.3%
5.

Incubate in 3% Bovine Serum Albumin (BSA) for 1h 0m 0s at Room temperature

5.1.

3% Bovine Serum Albumin (BSA)

AB
PBS500 ml
BSA15 g
6.

Incubate with primary antibody (1:200) in 3% BSA at 4°C 1h 0m 0s

7.

Wash three times with PBS, incubate 0h 5m 0s in between washes at 4Room temperature

8.

Incubate with secondary antibody (1:1,000) in 3% BSA at 4Room temperature for 1h 0m 0s in the dark and in a humidified chamber.

9.

Wash once with PBS

10.

Incubate with 0.1 µg/ml DAPI for 0h 5m 0s at 4Room temperature

11.

Wash twice with PBS, incubate 0h 5m 0s in between washes at 4Room temperature

12.

Image cells, seal the plate with parafilm, and wrap with foil for longer storage at 4°C. Florescence is usually stable for several weeks.

B. Alkaline phosphatase staining

13.

Wash once with PBS

14.

Fix cells with cold 4% PFA, 0h 10m 0s at 4Room temperature.

15.

Wash twice with PBS

16.

Incubate cells with 100 mM Tris, pH 9.5, 0h 10m 0s at 4Room temperature

16.1.

100 mM Tris, pH 9.5

AB
Tris6.57g
HClAdjust pH to 9.5

Final volume: 500 ml

17.

Add NBT/BCIP substrate in 100 mM Tris, and let reaction develop at 4Room temperature, avoiding light until color becomes clearly apparent in control cells.

Note
We have used NBT/BCIP substrate from two different vendors, which can be found in the materials list. The formulation for each are as follows:

18.

Wash in PBS and keep in PBS (violet product is soluble in organic solvent).

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