Western blotting

Marine Houdou, Peter Vangheluwe, rosanne.wouters

Published: 2023-07-28 DOI: 10.17504/protocols.io.ewov1oemklr2/v1

Abstract

Protocol to detect proteins via Western Blotting.

Steps

Harvesting cells

1.

collect the cells by scrapping them with a scrapper in Dulbecco’s Phosphate Buffered saline modified without calcium chloride and magnesium chloride (DPBS) or, using 0.25% Trypsin-EDTA for which stop enzymatic reaction by adding culture medium.

2.

Centrifuge cell suspensions at 450 g, 4°C for 0h 5m 0s.

3.

Resuspend cell pellets with DPBS and centrifuge following the same indications as in 2 . Repeat once.

4.

Discard supernatants and keep cell pellets on ice.

Cell lysis and protein concentration determination

5.

Resuspend cell pellets in RIPA buffer (RIPA Lysis and Extraction Buffer supplemented with protease cocktail inhibitors.

6.

Vortex 0h 0m 30s and keep on ice for 0h 30m 0s.

7.

Centrifuge at 20,000g, 4°C for 0h 30m 0s.

8.

Keep supernatants on ice to proceed with protein concentration determination using the micro-BCA Protein Assay Kit.

SDS-PAGE

9.

Loading

9.1.

Mix 20 µg of protein with NuPAGE LDS sample buffer and 5% β-mercaptoethanol final.

9.2.

Load protein on pre-cast 4-12% Bis-Tris gels. Include at least one lane with a protein ladder.

10.

Running

10.1.

Run for 0h 10m 0sat 100V and 1h 30m 0sat 110-130V.

11.

Transfer

11.1.

Transfer onto PVDF membranes using a liquid transfer and following settings: 100V, 1h 15m 0s, 4°C.

11.2.

Scan membrane if necessary.

12.

Blocking

12.1.

1h 0m 0s Block membranes with blocking buffer (5% milk powder in 1X TBS and 0.1% Tween20 (REF)) for 1h 0m 0s at room temperature, 19 rpm.

13.

Primary antibodies

13.1.

Incubate membrane with primary antibodies in solution (1% bovine serum albumin in 1X TBS-Tween20 (TBS-T) buffer), 1h 0m 0sat 4°C, 19 rpm.

13.2.

Wash membrane three times for 0h 5m 0s in TBS-T, 19 rpm.

14.

Secondary antibodies

14.1.

Incubate membrane with peroxidase-conjugated secondary antibodies in solution (1% milk powder in 1X TBS-T) for 1h 0m 0sat room temperature and, 19 rpm.

14.2.

Wash membrane five times for0h 5m 0sin TBS-T, 19 rpm.

15.

Detection

16.

Use a chemiluminescence reagent to detect signal and acquire with a Biorad Camera (Vilber Lourmat) and its software (ImageLab).

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