CODEX FFPE Microtome Sectioning

Joanna Bi

Published: 2024-05-15 DOI: 10.17504/protocols.io.n2bvjn835gk5/v1

Abstract

Protocol for sectioning FFPE blocks for use with CODEX

Steps

1.

Place the paraffin blocks on wet ice for 5-10 minutes to rehydrate

2.

Heat up a water bath to 40º C

3.

Insert a new blade into the microtome

4.

Prepare Superfrost Plus Microsocope slides (Cat. No: 1255015) next to the microtome

5.

Place a paraffin block on to the microtome and cut into it until the desired part of the sample is reached

6.

Section the tissue at 4 μm

7.

Place the sectioned tissue in the water bath until it flattens out

8.

Place a prepared slide in the water bath, move it towards the tissue, and gently lift it out of the bath

8.1.

Make sure that the tissue is within these boundaries

9.

Change the blade (or move it so an unused portion is being used) between samples and when there is paraffin build up or chipping on the blade

10.

Let the slides dry facing upwards at an angle

11.

Store the slides at 4º C for up to 6 months

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