Bacterial Genomics24

We will install many of the software we will use using conda.

Conda

To install conda, run the following script

wget https://repo.anaconda.com/archive/Anaconda3-2023.09-0-Linux-x86_64.sh
```Once the download is complete, run this script:

bash Anaconda3-2023.09-0-Linux-x86_64.sh

 _conda: command not found_ 



 If that happens, run this script to add conda to path:



```export PATH=~/anaconda3/bin:$PATH
```But again, if you refresh the shell, you will bump into  _conda: command not found_ again. So, add the script to the bashrc file.



Open bashrc using 

nano ~/.bashrc

 **Configuring bioconda** 



Run the following scripts to configure Bioconda

conda config --add channels defaults conda config --add channels biocondac onda config --add channels conda-forge