FastDNA SPIN Kit for Soil

leighton.r.king

Published: 2023-01-16 DOI: 10.17504/protocols.io.e6nvwjzmwlmk/v1

Abstract

The FastDNATM SPIN Kit for Soil quickly and efficiently isolates PCR-ready genomic DNA directly from soil samples in less than 30 minutes. Designed for use with the FastPrep® instruments from MP Biomedicals, plant and animal tissues, bacteria, algae, fungal spores and other members of a soil population are easily lysed within 40 seconds. These benchtop devices use a unique, optimized motion to homogenize samples by multidirectional, simultaneous impaction with lysing matrix particles. FastPrep instruments provide a quick, efficient and highly reproducible homogenization that surpasses traditional extraction methods using enzymatic digestion, sonication, blending, douncing and vortexing.

Samples are placed into 2.0 mL tubes containing Lysing Matrix E, a mixture of ceramic and silica particles designed to efficiently lyse all soil organisms, including historically difficult sources, such as eubacterial spores and endospores, gram positive bacteria, yeast, algae, nematodes and fungi. Homogenization in a FastPrep instrument with Lysing Matrix E takes place in the presence of MT Buffer and Sodium Phosphate Buffer, reagents carefully developed to protect and solubilize nucleic acids and proteins upon cell lysis. These reagents work synergistically to allow extraction of genomic DNA with minimal RNA contamination.

Following lysis, samples are centrifuged to pellet soil, cell debris and lysing matrix. DNA is purified from the supernatant with the Binding Matrix FastDNA procedure using SPIN filters. Eluted DNA is ready for PCR, restriction digest, electrophoresis and any other desired application.

Steps

PREPARE the sample

1.

ADD up to 500mg of soil sample, 978µL Sodium Phosphate Buffer, and 122µL MT Buffer to Lysing Matrix E tube

1.
1.1.
1.2.

HOMOGENIZE with the FastPrep

2.

LOAD tube in FastPrep instrument.

PROCESS 0h 0m 40s at a speed setting of 6.0 m/s.

CENTRIFUGE at 14000x g to pellet debris

PRECIPITATE proteins

3.

TRANSFER supernatant to a clean 2mL microcentrifuge tube.

ADD 250µL PPS and mix 10 times.

CENTRIFUGE at 14000x g to pellet precipitate.

ADJUST binding conditions

4.

TRANSFER supernatant to 15mL tube.

ADD 1mL Binding Matrix Solution. Invert 0h 2m 0s and place tube on a rack for 0h 3m 0s

DISCARD 500µL of supernatant.

BIND the DNA

5.

TRANSFER max 600µL of DNA Solution to a SPIN Filter Tube.

CENTRIFUGE at14000x g .

Empty catch tube.

Repeat step 5 if the volume of the mixture is higher than 600µL.

WASH the SPIN Filter

6.

ADD 500µL prepared SEWS-M Solution.

CENTRIFUGE at 14000x g.

Empty catch tube.

DRY the SPIN Filter

7.

CENTRIFUGE again at 14000x g.

AIR DRY SPIN Filter for 0h 5m 0s atRoom temperature .

ELUTE the DNA

8.

ADD - 50µL - 100µL DES Elution Solution.

CENTRIFUGE at 14000x g.

DNA in the catch tube is ready-to-use.

推荐阅读

Nature Protocols
Protocols IO
Current Protocols
扫码咨询